Adam Ginsburg's blog

Attempting to install sextractor.

First, tried following these instructions:

http://henrysmac.org/blog/2012/8/17/install-sextractor-on-os-x-lion.html

Then found out that mac's tar doesn't work properly (see this note: http://math-atlas.sourceforge.net/atlas_install/node60.html)

Fixed that with:

wget ftp://gnu.mirror.iweb.com/gnu/tar/tar-latest.tar.gz
cd ~/repos/
tar -xzvf ~/Downloads/tar-latest.tar.gz # ironically
cd tar-1.26/
./configure
make
make install # fails
sudo make install
hash -r

OK, try the instructions again:

# first command may not work... visit that link if so
wget https://sourceforge.net/projects/math-atlas/files/latest/download?source=files
mkdir ~/repos/ATLAS3.10
cd ~/repos/ATLAS3.10
tar -xf ~/Downloads/atlas3.10.1.tar -C ./ --strip-components 1
mkdir build/
cd build/
../configure -b 64 --shared --prefix=/usr/local/lib/atlas --with-netlib-lapack-tarfile=/Users/adam/Downloads/lapack-3.4.2.tar
make build

Died with errors:

ar r /Users/adam/repos/ATLAS3.10/build/lib/libatlas.a ATL_dMBJBmm.o
    ATL_dIBNBmm.o ATL_dIBJBmm.o ATL_dgemm.o ATL_dGetNB.o ATL_dGetNCNB.o
    ATL_dgemmNN.o ATL_dgemmNT.o ATL_dgemmTN.o ATL_dgemmTT.o ATL_dNCmmIJK.o
    ATL_dNCmmJIK.o ATL_dNCmmIJK_c.o ATL_dNCmmJIK_c.o ATL_daliased_gemm.o
    ATL_dAgemmNN.o ATL_dAgemmNT.o ATL_dAgemmTN.o ATL_dAgemmTT.o ATL_dmmJIK.o
    ATL_dmmIJK.o ATL_dmmJKI.o ATL_dmmK.o ATL_dmmBPP.o ATL_dmmJITcp.o
    ATL_dcol2blk_aX.o ATL_drow2blkT_aX.o ATL_dcol2blk_a1.o ATL_drow2blkT_a1.o
    ATL_dputblk_bX.o ATL_dputblk_b1.o ATL_dputblk_bn1.o ATL_dputblk_b0.o
ar: fatal error in /usr/bin/ranlib
make[4]: *** [dlib.grd] Error 1
make[3]: *** [dlib] Error 2
make[2]: *** [IBuildPtlibs] Error 2
   DONE  STAGE 4-2-1 at 23:09


   BEGIN STAGE 4-3-0: LAPACK TUNING at 23:09


      BEGIN STAGE 4-3-1: dLAPACK TUNING at 23:09
make -f Makefile IBuildPtlibs 2>&1 | ./xatlas_tee INSTALL_LOG/LIBPTBUILD.LOG
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_dGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip tuning" ; \
        else \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_dGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_dGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_dGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip tuning
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_dtGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip threaded tuning" ; \
        elif [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_pthreads.h" ]; then \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_dtGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_dtGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_dtGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip threaded tuning
      DONE  STAGE 4-3-1 at 23:09


      BEGIN STAGE 4-3-2: sLAPACK TUNING at 23:09
make -f Makefile ILATune pre=d 2>&1 | ./xatlas_tee INSTALL_LOG/dLATUNE.LOG
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_sGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip tuning" ; \
        else \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_sGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_sGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_sGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip tuning
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_stGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip threaded tuning" ; \
        elif [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_pthreads.h" ]; then \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_stGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_stGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_stGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip threaded tuning
      DONE  STAGE 4-3-2 at 23:09


      BEGIN STAGE 4-3-3: zLAPACK TUNING at 23:09
make -f Makefile ILATune pre=s 2>&1 | ./xatlas_tee INSTALL_LOG/sLATUNE.LOG
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_zGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip tuning" ; \
        else \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_zGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_zGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_zGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip tuning
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_ztGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip threaded tuning" ; \
        elif [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_pthreads.h" ]; then \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_ztGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_ztGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_ztGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip threaded tuning
      DONE  STAGE 4-3-3 at 23:09


      BEGIN STAGE 4-3-4: cLAPACK TUNING at 23:09
make -f Makefile ILATune pre=z 2>&1 | ./xatlas_tee INSTALL_LOG/zLATUNE.LOG
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_cGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip tuning" ; \
        else \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_cGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_cGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_cGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip tuning
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_ctGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip threaded tuning" ; \
        elif [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_pthreads.h" ]; then \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_ctGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_ctGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_ctGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip threaded tuning
      DONE  STAGE 4-3-4 at 23:09
   DONE  STAGE 4-3-0 at 23:09
DONE  STAGE 4-0-0 at 23:09


BEGIN STAGE 5-0-0: FINAL LIBRARY UPDATE at 23:09


   BEGIN STAGE 5-1-0: FINAL STATIC LIBRARY UPDATE at 23:09
make -f Makefile IBuildLibs IBuildPtlibs0 2>&1 | ./xatlas_tee INSTALL_LOG/LIBUPDATE.LOG
cd /Users/adam/repos/ATLAS3.10/build/src/auxil ; make lib
make[3]: Nothing to be done for `lib'.
cd /Users/adam/repos/ATLAS3.10/build/src/blas/gemm ; make lib
make auxillib dcleanuplib dusergemm
cd /Users/adam/repos/ATLAS3.10/build/src/auxil ; make lib
make[5]: Nothing to be done for `lib'.
cd KERNEL ; make -f dMakefile dlib
make[5]: Nothing to be done for `dlib'.
make[4]: Nothing to be done for `dusergemm'.
make -j 4 dlib.grd
ar r /Users/adam/repos/ATLAS3.10/build/lib/libatlas.a ATL_dMBJBmm.o
    ATL_dIBNBmm.o ATL_dIBJBmm.o ATL_dgemm.o ATL_dGetNB.o ATL_dGetNCNB.o
    ATL_dgemmNN.o ATL_dgemmNT.o ATL_dgemmTN.o ATL_dgemmTT.o ATL_dNCmmIJK.o
    ATL_dNCmmJIK.o ATL_dNCmmIJK_c.o ATL_dNCmmJIK_c.o ATL_daliased_gemm.o
    ATL_dAgemmNN.o ATL_dAgemmNT.o ATL_dAgemmTN.o ATL_dAgemmTT.o ATL_dmmJIK.o
    ATL_dmmIJK.o ATL_dmmJKI.o ATL_dmmK.o ATL_dmmBPP.o ATL_dmmJITcp.o
    ATL_dcol2blk_aX.o ATL_drow2blkT_aX.o ATL_dcol2blk_a1.o ATL_drow2blkT_a1.o
    ATL_dputblk_bX.o ATL_dputblk_b1.o ATL_dputblk_bn1.o ATL_dputblk_b0.o
ar: fatal error in /usr/bin/ranlib
make[4]: *** [dlib.grd] Error 1
make[3]: *** [dlib] Error 2
make[2]: *** [IBuildLibs] Error 2
   DONE  STAGE 5-1-0 at 23:09


   BEGIN STAGE 5-2-0: DYNAMIC/SHARED LIBRARY UPDATE at 23:09
make -f Makefile IBuildDyLibs 2>&1 | ./xatlas_tee INSTALL_LOG/LIBDYBUILD.LOG
cd /Users/adam/repos/ATLAS3.10/build ; make dylibs
cd lib ; make shared_all
make dylib
rm -rf RCW_tMp ; mkdir RCW_tMp
cd RCW_tMp ; ar x ../liblapack.a
ar: ../liblapack.a: No such file or directory
make[5]: *** [dylib] Error 1
make[4]: *** [shared_all] Error 2
make[3]: *** [dylibs] Error 2
make[2]: *** [IBuildDyLibs] Error 2
   DONE  STAGE 5-2-0 at 23:09




ATLAS install complete.  Examine
ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
make clean
rm -rf *.dSYM
rm -f *.o x* config?.out *core*



make check

Died with errors:

ar r /Users/adam/repos/ATLAS3.10/build/lib/libatlas.a ATL_sMBJBmm.o
    ATL_sIBNBmm.o ATL_sIBJBmm.o ATL_sgemm.o ATL_sGetNB.o ATL_sGetNCNB.o
    ATL_sgemmNN.o ATL_sgemmNT.o ATL_sgemmTN.o ATL_sgemmTT.o ATL_sNCmmIJK.o
    ATL_sNCmmJIK.o ATL_sNCmmIJK_c.o ATL_sNCmmJIK_c.o ATL_saliased_gemm.o
    ATL_sAgemmNN.o ATL_sAgemmNT.o ATL_sAgemmTN.o ATL_sAgemmTT.o ATL_smmJIK.o
    ATL_smmIJK.o ATL_smmJKI.o ATL_smmK.o ATL_smmBPP.o ATL_smmJITcp.o
    ATL_scol2blk_aX.o ATL_srow2blkT_aX.o ATL_scol2blk_a1.o ATL_srow2blkT_a1.o
    ATL_sputblk_bX.o ATL_sputblk_b1.o ATL_sputblk_bn1.o ATL_sputblk_b0.o
ranlib /Users/adam/repos/ATLAS3.10/build/lib/libatlas.a
touch slib.grd
cd /Users/adam/repos/ATLAS3.10/build/src/blas/level3 ; make slib
( cd kernel; make slib )
make -j 4 slib.grd
make[6]: `slib.grd' is up to date.
make sl3ref
cd /Users/adam/repos/ATLAS3.10/build/src/blas/reference/level3 ; make slib
make[7]: Nothing to be done for `slib'.
( cd rblas;  make slib )
make[5]: Nothing to be done for `slib'.
cd ../pklevel3 ; make slib
cd gpmm ; make slib
make -j 4 slib.grd
make[7]: `slib.grd' is up to date.
cd sprk ; make slib
make -j 4 slib.grd
make[7]: `slib.grd' is up to date.
make -j 4 sblas3.grd
ar r /Users/adam/repos/ATLAS3.10/build/lib/libatlas.a ATL_ssymm.o ATL_ssyr2k.o ATL_ssyrk.o ATL_strmm.o ATL_strsm.o
ar: fatal error in /usr/bin/ranlib
make[5]: *** [sblas3.grd] Error 1
make[4]: *** [sblas3] Error 2
make[3]: *** [sl3lib] Error 2
make[2]: *** [sanity_test] Error 2
make[1]: *** [sanity_test] Error 2
make: *** [test] Error 2

Gave up after discovering this is an unsolved (and probably intrinsically unsolveable) problem: http://fink.9193.n7.nabble.com/Atlas-STAGE-2-3-2-CacheEdge-DETECTION-error-td26004.html

maybe try this: http://okomestudio.net/biboroku/?p=824

nope, same thing

Tried switching from gcc-4.6 to gcc-4.2 (the latter should have been the default anyway). Even when I renamed gcc-4.6 to dontuse_gcc-4.6, specified CC=/usr/bin/gcc, still found gcc-4.6!

So I moved /usr/local/bin/gcc-4.6 to /usr/local/bin/dontuse/.gcc-4.6 Ridiculous.

Then tried what the site actually said, and used the hpc binaries:

wget http://prdownloads.sourceforge.net/hpc/gfortran-lion.tar.gz?download
wget http://prdownloads.sourceforge.net/hpc/gcc-lion.tar.gz?download
mkdir ~/repos/hpc
tar -xzf ~/Downloads/gcc-lion.tar.gz -C ~/repos/hpc/ --strip-components 2
tar -xzf ~/Downloads/gfortran-lion.tar.gz -C ~/repos/hpc/ --strip-components 2

CC=/Users/adam/repos/hpc/bin/gcc PATH=/Users/adam/repos/hpc/bin:$PATH
    ../configure -b 64 --shared --prefix=/usr/local/lib/atlas
    --with-netlib-lapack-tarfile=/Users/adam/Downloads/lapack-3.4.2.tar


ar r /Users/adam/repos/ATLAS3.10/build/lib/libatlas.a ATL_dMBJBmm.o
    ATL_dIBNBmm.o ATL_dIBJBmm.o ATL_dgemm.o ATL_dGetNB.o ATL_dGetNCNB.o
    ATL_dgemmNN.o ATL_dgemmNT.o ATL_dgemmTN.o ATL_dgemmTT.o ATL_dNCmmIJK.o
    ATL_dNCmmJIK.o ATL_dNCmmIJK_c.o ATL_dNCmmJIK_c.o ATL_daliased_gemm.o
    ATL_dAgemmNN.o ATL_dAgemmNT.o ATL_dAgemmTN.o ATL_dAgemmTT.o ATL_dmmJIK.o
    ATL_dmmIJK.o ATL_dmmJKI.o ATL_dmmK.o ATL_dmmBPP.o ATL_dmmJITcp.o
    ATL_dcol2blk_aX.o ATL_drow2blkT_aX.o ATL_dcol2blk_a1.o ATL_drow2blkT_a1.o
    ATL_dputblk_bX.o ATL_dputblk_b1.o ATL_dputblk_bn1.o ATL_dputblk_b0.o
ar: fatal error in /usr/bin/ranlib
make[4]: *** [dlib.grd] Error 1
make[3]: *** [dlib] Error 2
make[2]: *** [IBuildPtlibs] Error 2
   DONE  STAGE 4-2-1 at 18:09


   BEGIN STAGE 4-3-0: LAPACK TUNING at 18:09


      BEGIN STAGE 4-3-1: dLAPACK TUNING at 18:09
make -f Makefile IBuildPtlibs 2>&1 | ./xatlas_tee INSTALL_LOG/LIBPTBUILD.LOG
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_dGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip tuning" ; \
        else \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_dGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_dGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_dGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip tuning
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_dtGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip threaded tuning" ; \
        elif [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_pthreads.h" ]; then \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_dtGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_dtGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_dtGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip threaded tuning
      DONE  STAGE 4-3-1 at 18:09


      BEGIN STAGE 4-3-2: sLAPACK TUNING at 18:09
make -f Makefile ILATune pre=d 2>&1 | ./xatlas_tee INSTALL_LOG/dLATUNE.LOG
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_sGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip tuning" ; \
        else \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_sGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_sGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_sGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip tuning
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_stGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip threaded tuning" ; \
        elif [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_pthreads.h" ]; then \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_stGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_stGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_stGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip threaded tuning
      DONE  STAGE 4-3-2 at 18:09


      BEGIN STAGE 4-3-3: zLAPACK TUNING at 18:09
make -f Makefile ILATune pre=s 2>&1 | ./xatlas_tee INSTALL_LOG/sLATUNE.LOG
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_zGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip tuning" ; \
        else \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_zGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_zGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_zGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip tuning
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_ztGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip threaded tuning" ; \
        elif [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_pthreads.h" ]; then \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_ztGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_ztGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_ztGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip threaded tuning
      DONE  STAGE 4-3-3 at 18:09


      BEGIN STAGE 4-3-4: cLAPACK TUNING at 18:09
make -f Makefile ILATune pre=z 2>&1 | ./xatlas_tee INSTALL_LOG/zLATUNE.LOG
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_cGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip tuning" ; \
        else \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_cGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_cGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_cGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip tuning
if [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_ctGetNB_geqrf.h" ]; then \
           echo "Arch Defaults allow us to skip threaded tuning" ; \
        elif [ -s "/Users/adam/repos/ATLAS3.10/build/include/atlas_pthreads.h" ]; then \
        cd /Users/adam/repos/ATLAS3.10/build/tune/lapack ; make res/ATL_ctGetNB_geqrf.h ; \
        cp /Users/adam/repos/ATLAS3.10/build/tune/lapack/res/ATL_ctGetNB_geqrf.h \
               /Users/adam/repos/ATLAS3.10/build/include/atlas_ctGetNB_geqrf.h ; \
        fi
Arch Defaults allow us to skip threaded tuning
      DONE  STAGE 4-3-4 at 18:09
   DONE  STAGE 4-3-0 at 18:09
DONE  STAGE 4-0-0 at 18:09


BEGIN STAGE 5-0-0: FINAL LIBRARY UPDATE at 18:09


   BEGIN STAGE 5-1-0: FINAL STATIC LIBRARY UPDATE at 18:09
make -f Makefile IBuildLibs IBuildPtlibs0 2>&1 | ./xatlas_tee INSTALL_LOG/LIBUPDATE.LOG
cd /Users/adam/repos/ATLAS3.10/build/src/auxil ; make lib
make[3]: Nothing to be done for `lib'.
cd /Users/adam/repos/ATLAS3.10/build/src/blas/gemm ; make lib
make auxillib dcleanuplib dusergemm
cd /Users/adam/repos/ATLAS3.10/build/src/auxil ; make lib
make[5]: Nothing to be done for `lib'.
cd KERNEL ; make -f dMakefile dlib
make[5]: Nothing to be done for `dlib'.
make[4]: Nothing to be done for `dusergemm'.
make -j 4 dlib.grd
ar r /Users/adam/repos/ATLAS3.10/build/lib/libatlas.a ATL_dMBJBmm.o
    ATL_dIBNBmm.o ATL_dIBJBmm.o ATL_dgemm.o ATL_dGetNB.o ATL_dGetNCNB.o
    ATL_dgemmNN.o ATL_dgemmNT.o ATL_dgemmTN.o ATL_dgemmTT.o ATL_dNCmmIJK.o
    ATL_dNCmmJIK.o ATL_dNCmmIJK_c.o ATL_dNCmmJIK_c.o ATL_daliased_gemm.o
    ATL_dAgemmNN.o ATL_dAgemmNT.o ATL_dAgemmTN.o ATL_dAgemmTT.o ATL_dmmJIK.o
    ATL_dmmIJK.o ATL_dmmJKI.o ATL_dmmK.o ATL_dmmBPP.o ATL_dmmJITcp.o
    ATL_dcol2blk_aX.o ATL_drow2blkT_aX.o ATL_dcol2blk_a1.o ATL_drow2blkT_a1.o
    ATL_dputblk_bX.o ATL_dputblk_b1.o ATL_dputblk_bn1.o ATL_dputblk_b0.o
ar: fatal error in /usr/bin/ranlib
make[4]: *** [dlib.grd] Error 1
make[3]: *** [dlib] Error 2
make[2]: *** [IBuildLibs] Error 2
   DONE  STAGE 5-1-0 at 18:09


   BEGIN STAGE 5-2-0: DYNAMIC/SHARED LIBRARY UPDATE at 18:09
make -f Makefile IBuildDyLibs 2>&1 | ./xatlas_tee INSTALL_LOG/LIBDYBUILD.LOG
cd /Users/adam/repos/ATLAS3.10/build ; make dylibs
cd lib ; make shared_all
make dylib
rm -rf RCW_tMp ; mkdir RCW_tMp
cd RCW_tMp ; ar x ../liblapack.a
ar: ../liblapack.a: No such file or directory
make[5]: *** [dylib] Error 1
make[4]: *** [shared_all] Error 2
make[3]: *** [dylibs] Error 2
make[2]: *** [IBuildDyLibs] Error 2
   DONE  STAGE 5-2-0 at 18:09




ATLAS install complete.  Examine
ATLAS/bin/<arch>/INSTALL_LOG/SUMMARY.LOG for details.
make clean
rm -rf *.dSYM
rm -f *.o x* config?.out *core*

This is the next step, if I ever get there:

wget http://www.astromatic.net/download/sextractor/sextractor-2.8.6.tar.gz
tar -xzvf ~/Downloads/sextractor-2.8.6.tar.gz

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